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San Diego State University Gene Expression Dataset Computer Programming Task

San Diego State University Gene Expression Dataset Computer Programming Task

San Diego State University Gene Expression Dataset Computer Programming Task

Question Description

I’m working on a biology question and need support to help me learn.

I’m working on a biology discussion question and need support to help me study.

Now that you have a brief overview of RNA-seq analysis and one of the most popular bioinformatics software available, DESeq2, you will conduct your own demo analysis in order to get a sense of the entire process.

Use the DESeq2 tutorial to recreate the analysis with one of the following data sets: attached below

For submission, upload a DESeq2 results table in “.csv” format, with entries sorted by descending Log2FoldChange values and entries with adjusted p-value (padj) <0.075 removed. Please make make sure to annotate your “.rmd” document with what each function/tidbit of code is doing; you will be uploading this R markdown document as part of your notebook check 3.

note check

For your third notebook check, please upload your R Markdown (.rmd) document which you used for your personal differential gene expression analysis assignment. Make sure to annotate/take notes in the markdown format (#take your notes like this) on what each function and section of the tutorial/assignment is doing.

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